PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488747.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 556aa    MW: 60474.9 Da    PI: 8.9194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16259308255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  XP_016488747.1 259 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 308
                     889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-23254325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-18255325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.272257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-14259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-15259312No hitNo description
SMARTSM003538.4E-13263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PIPPQAGGFL KTHDFLQPLE QAEKALRKDE  60
TKVEVVAVEK PQAPVGPPSV EHILPGGIGT YSISYLHQRV PKPEASLFAV AQASSTDRND  120
ENSNCSSYTG GSGFTLWDES AVKKGKTGKE NSGGDRHVLR GLNTGGGQPT TSLEWQSQSS  180
SNHKHNTTAI SSLSSARQSS PLKTQSFVHM ITSAKNAQDD DDDDDEDFVI KKEPQSHPRG  240
NLSVKVDGEG NDKKPNTPRS KHSATEQRRR SKINDRFQML RGIIPNSDQK RDKASFLLEV  300
IEYIHFLQEK VHKYEESYQG WENEPLKLPL SKCHRTTGGV SNHPQGTINT SGAAPTYAGK  360
FDENIMGISS TNPFNGQKVE PNISTASLKE SSQRPGLTNK ATTTSMHPNT FSFCGASSTA  420
ALYSSKLTAD TAKLESKSHP QFSVSRSHMT DYAIPNANSK GQDLSIERGT ISISSAYSQG  480
LLNTLTLALQ NSGVDLSQAN ISVQIDLGKR ANGILHSSAS TVKGDDVSTN KQPIPKSIGT  540
STREESDRAF KRLKTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137860.0BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488747.10.0PREDICTED: transcription factor BIM1-like isoform X2
TrEMBLA0A1S4BIR80.0A0A1S4BIR8_TOBAC; transcription factor BIM1-like isoform X2
STRINGXP_009611733.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-107bHLH family protein