PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016488950.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 222aa MW: 25312.7 Da PI: 8.4635

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016488950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.1	2.3e-13	60	106	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ienk r tfskRr+g+ KKA+ L Cda++ +++ s+ gk + XP_016488950.1 60 KKIENKDDRFATFSKRRTGLYKKASNLVSQCDADIGIVLSSPAGKPF 106 68*****************************************9855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.081	52	112	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-18	52	111	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.2E-20	53	123	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-13	54	74	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-18	61	108	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-13	74	89	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-13	89	110	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MRCSNLIPCT GFQFSMLGEG GTGNKCSNYT AFLFAPSLTE KDWISMVSKK TKGRQKIAIK 60 KIENKDDRFA TFSKRRTGLY KKASNLVSQC DADIGIVLSS PAGKPFSFFH PTIDVVIARF 120 QNPDMQLSEI NRLVAAYARN KVNYLNSRLE EFDTREDAAT VQTRFYDQMS KTRQSDWWES 180 IEQLNACEMI MFEAWLDNAM FNLNNHLNQL EIGASSSSPN YF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016488950.1	1e-168	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1S4BJ83	1e-166	A0A1S4BJ83_TOBAC; agamous-like MADS-box protein AGL62
STRING	XP_009787785.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	8e-27	AGAMOUS-like 62