PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016489012.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 184aa MW: 20864.9 Da PI: 8.9489

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016489012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	62	2.5e-19	8	61	5	58
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqlla 58 ++seq+Cy+ Cn Cn +lavsvP + lf +vt+rCGhCt++ +vn+a a +++ XP_016489012.1 8 TNSEQLCYIPCNLCNIVLAVSVPCSNLFDIVTIRCGHCTNMWTVNMAAAFSQVS 61 579******************************************998765544 PP
2	YABBY	129.9	3.4e-40	80	153	98	170
YABBY 98 seklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s + +++ + pr ++rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl XP_016489012.1 80 SRMAVRSSLTKNPREETiANRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 153 2222344445555555548*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.8E-64	9	153	IPR006780	YABBY protein
SuperFamily	SSF47095	5.5E-8	94	146	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.0E-4	107	145	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MANCIDSTNS EQLCYIPCNL CNIVLAVSVP CSNLFDIVTI RCGHCTNMWT VNMAAAFSQV 60 SNYTSPEYKI DFGSSSKCNS RMAVRSSLTK NPREETIANR PPEKRQRVPS AYNQFIKEEI 120 QRIKANNPDI THREAFSTAA KNWAHFPHIH FGLTLETKNQ AKLENAEKHI MHRAALPKIK 180 TFTF

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009607227.1	1e-137	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_016489012.1	1e-137	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	1e-79	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S4BJP6	1e-135	A0A1S4BJP6_TOBAC; axial regulator YABBY 5-like
STRING	XP_009607227.1	1e-136	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-82	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]