PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489019.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 288aa    MW: 31479.5 Da    PI: 9.3605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042232251323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ Cgk+F  ++ L++H++++
  XP_016489019.1 232 CSQCGKPF-KPEKLHTHMKSC 251
                     ********.**********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQKDQTNQED HIQDPFMDSS KKTPSEIEEE SQNIASETST LTTDSPKLQE EEEKDSENKT  60
KPEKVNNFEN NSSSFSSSSS SFGSKKTKKK TEDHVKENGE KITTTPSSEK PSKNPSFDKS  120
RSYSNGASSI FRNLITCGAV DTNDSGIIPI RKNRPSFSSS GEKAVSFSSE ICKAEKVGGS  180
QRIFGTAWNQ QHQHTNGRKS CDGVYSSSKN KNEFGSRRSV SANYKPVNGP NCSQCGKPFK  240
PEKLHTHMKS CKGMKALAKG ANSVTSATEK TSKDASKVDS VSGTYLTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754405e-57HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792716.10.0PREDICTED: protein UPSTREAM OF FLC isoform X1
RefseqXP_016489019.10.0PREDICTED: uncharacterized serine-rich protein C215.13-like
TrEMBLA0A1S4BJI20.0A0A1S4BJI2_TOBAC; uncharacterized serine-rich protein C215.13-like
TrEMBLA0A1U7XSW40.0A0A1U7XSW4_NICSY; protein UPSTREAM OF FLC isoform X1
STRINGXP_009792716.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52061315