PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016489220.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 304aa MW: 34386.8 Da PI: 8.8071

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016489220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.5	7.9e-34	62	202	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...v.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+P+d+e++ e+L++kv +++ + + i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ XP_016489220.1 62 LPAGVKFDPSDHEIL-EHLEAKVLSDTlklhplI---DefiLtIDGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHteidg 151 799*********9.99****95554443...143333666557******.566677888**************74444665 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_016489220.1 152 gETRWHKTGKTRPVYI-GGGLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 202 5778********.999*******66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-38	56	221	IPR003441	NAC domain
PROSITE profile	PS51005	33.136	62	221	IPR003441	NAC domain
Pfam	PF02365	2.5E-14	63	202	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MTWRNQSNGE TALPIISAPP SDESNIMITS KVDHEIRIIT CPSCGQSIEL QNQRGIHDLP 60 GLPAGVKFDP SDHEILEHLE AKVLSDTLKL HPLIDEFILT IDGENGICYT HPEKLPGVSK 120 DGQVRHFFHR PSKAYTTGTR KRRKVHTEID GGETRWHKTG KTRPVYIGGG LKGYKKILVL 180 YTNYGRQRKP EKTNWVMHQY HLGENEEEKD GELVVSKVFY QTQPRQCGSL SIRKPVDNNK 240 SRSLSRQDSP ILKTTNFVDY YNPPFISYDI GSQNRDSSPQ LIQNLVVHGD SSSFVIPSNA 300 SKEK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-127	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	1e-127	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016489220.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-119	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1S4BK28	0.0	A0A1S4BK28_TOBAC; NAC domain-containing protein 73-like
STRING	XP_009797428.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-109	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]