PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489389.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 226aa    MW: 25962.7 Da    PI: 9.6967
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-201172157
                    TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r +R+++t+eql  Lee+++k  r+p+a++++ ++++l    +++ ++V++WFqN++a++++
  XP_016489389.1 11 RPTRWSPTPEQLMFLEEMYRKgLRNPNATQIQNITAHLssygKIEGKNVFYWFQNHKARDRQ 72
                    569*****************99*************************************996 PP
2Wus_type_Homeobox114.26.4e-371373464
  Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       tRW+PtpeQ++ Lee+y++Glr+Pn+ +iq+ita+L++yGkie+kNVfyWFQN+kaR+rqk
     XP_016489389.1 13 TRWSPTPEQLMFLEEMYRKGLRNPNATQIQNITAHLSSYGKIEGKNVFYWFQNHKARDRQK 73
                       8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.592873IPR001356Homeobox domain
SuperFamilySSF466891.28E-111077IPR009057Homeodomain-like
SMARTSM003897.2E-61077IPR001356Homeobox domain
CDDcd000864.23E-51173No hitNo description
PfamPF000468.0E-181172IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-71472IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSFLKREKLT RPTRWSPTPE QLMFLEEMYR KGLRNPNATQ IQNITAHLSS YGKIEGKNVF  60
YWFQNHKARD RQKLKKKLLA QMNQQQIFSQ YPVDAHNTTT TNTNTNNLFH CPTDHYSHNS  120
SSVVNQICPI SSPGLPQEGG IKDASSRLMT YLYPMDISRP VENMENCMIR PYGKDWVLMM  180
NISPNTLPCC INKPLKTLPL FPITETNGLK EQTNTTSSTL SHSFSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6281721e-104FJ628172.1 Petunia x hybrida cultivar W138 WOX3 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778688.11e-170PREDICTED: WUSCHEL-related homeobox 3-like
RefseqXP_016489389.11e-170PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1S4BKJ01e-169A0A1S4BKJ0_TOBAC; WUSCHEL-related homeobox 3-like
TrEMBLA0A1U7WJ611e-169A0A1U7WJ61_NICSY; WUSCHEL-related homeobox 3-like
STRINGXP_009778688.11e-170(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.17e-42WOX family protein