PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489818.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 448aa    MW: 49605.4 Da    PI: 8.5658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.7e-15324405179
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                     f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+
  XP_016489818.1 324 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDT 405
                     99**************************666667778***************9989999999***9.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.27E-16321405IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-24321405IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-19322405No hitNo description
PROSITE profilePS508638.868324427IPR003340B3 DNA binding domain
SMARTSM010196.4E-13324417IPR003340B3 DNA binding domain
PfamPF023621.2E-12324405IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGSMICMNEL CRATTSSEWK KGWSLKSGGF AKLCYNCGSA FENLVFCETF HSEESGWREC  60
KTCRKLIHCG CIASKYLYEY MDYGGVACIN CASQLDGHSI RPIQIPGDDL PNGTLGTKAT  120
QPLGVENKMD ENNFDKRRVM RLSKPVETSE SGQLFQTQKN DIKQETMVPI GNVSTCFSNL  180
NQQPVGAASL FGKPDNDRQS QGVKDMYESI NQPSLNFSLS TLVGASSSAQ PFPGGDVEGR  240
EQSKSSPFQL GQRTRHILPK PPKPSPNSGS ESNKAMTSQT RVARPPAEGR GGRNQLLPRY  300
WPRITDQELQ QISGDLKSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP  360
IRIQDIKGKE WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTGNSSF FLLMKKNLHM  420
TNPVCSNCKT FSCMFPSVIS FKFNGNGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-583024051104B3 domain-containing transcription repressor VAL1
5yzz_C1e-583024051104B3 domain-containing transcription repressor VAL1
5z00_C1e-583024051104B3 domain-containing transcription repressor VAL1
5z00_G1e-583024051104B3 domain-containing transcription repressor VAL1
5z00_K1e-583024051104B3 domain-containing transcription repressor VAL1
5z00_M1e-583024051104B3 domain-containing transcription repressor VAL1
6j9a_A9e-593024052105B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489818.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like, partial
SwissprotQ6Z3U31e-118Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1S4BLQ70.0A0A1S4BLQ7_TOBAC; B3 domain-containing protein Os07g0679700-like
STRINGXP_009772834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-111HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]