PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016489873.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 207aa MW: 23296.3 Da PI: 9.0871

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016489873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.6e-09	152	195	4	51
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 +h+ +Er RR++iN+++ L+el+P + + k + a +L ++Y+ XP_016489873.1 152 SHSLAERLRREKINEKLRSLQELVPGC---Y-KTMGMAVMLDVIINYV 195 8************************98...2.3355555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.91E-9	146	198	No hit	No description
SuperFamily	SSF47459	4.58E-13	146	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-13	148	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.504	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-6	152	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-5	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MNSNMELLNQ EVENLSSNIQ LGDLALSNEG FSIHHQRIHH IDHDQIPMIM AFNNDMNLSS 60 NISNSQNVYD PVGAQFFTLG GPTYGINSIP ESDFLMNNIS TPAPPVSIGN GKVNGNYQNC 120 GGKKRKRKND READKPREVV HVRAKRGQAT DSHSLAERLR REKINEKLRS LQELVPGCYK 180 TMGMAVMLDV IINYVRSLXK IKLIFFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	127	KKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016489873.1	1e-152	PREDICTED: transcription factor bHLH78-like isoform X1
Refseq	XP_016489874.1	1e-152	PREDICTED: transcription factor bHLH78-like isoform X1
TrEMBL	A0A1S4BLV9	1e-151	A0A1S4BLV9_TOBAC; transcription factor bHLH78-like isoform X1
STRING	XP_009797952.1	1e-144	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9069	17	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	8e-37	bHLH family protein