PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489875.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 206aa    MW: 23168.2 Da    PI: 9.0871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09151194451
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 
                     +h+ +Er RR++iN+++  L+el+P +   + k +  a +L   ++Y+
  XP_016489875.1 151 SHSLAERLRREKINEKLRSLQELVPGC---Y-KTMGMAVMLDVIINYV 194
                     8************************98...2.3355555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-13145199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-9145197No hitNo description
PROSITE profilePS5088815.504147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-13147199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-6151177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-5153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNSNMELLNQ EVENLSSNIQ LGDLALSNEG FSIHHQRIHH IDHDQIPMIM AFNNDMNLSS  60
NISNSQNVYD PVGAQFFTLG GPTYGINSIP ESDFLMNNIS TPAPPVSIGN GKVNGNYNCG  120
GKKRKRKNDR EADKPREVVH VRAKRGQATD SHSLAERLRR EKINEKLRSL QELVPGCYKT  180
MGMAVMLDVI INYVRSLXKI KLIFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489875.11e-151PREDICTED: transcription factor BEE 3-like isoform X2
TrEMBLA0A1S4BLX91e-150A0A1S4BLX9_TOBAC; transcription factor BEE 3-like isoform X2
STRINGXP_009797952.11e-141(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-36bHLH family protein