PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016489877.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 164aa MW: 18325.8 Da PI: 9.9387

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016489877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.4e-09	109	153	4	52
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +h+ +Er RR++iN+++ L+el+P + + k + a +L ++Y++ XP_016489877.1 109 SHSLAERLRREKINEKLRSLQELVPGC---Y-KTMGMAVMLDVIINYVR 153 8************************98...2.33555555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.54E-9	103	155	No hit	No description
SuperFamily	SSF47459	2.88E-13	103	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.504	105	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-13	105	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-6	109	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-5	111	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MNSNMELLNQ EVENLSSNIQ LGDLALSNEG AQFFTLGGPT YGINSIPESD FLMNNISTPA 60 PPVSIGNGKV NGNYQNCGGK KRKRKNDREA DKPREVVHVR AKRGQATDSH SLAERLRREK 120 INEKLRSLQE LVPGCYKTMG MAVMLDVIIN YVRSLXKIKL IFFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	84	KKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016489877.1	1e-118	PREDICTED: transcription factor bHLH75-like isoform X3
TrEMBL	A0A1S4BM09	1e-116	A0A1S4BM09_TOBAC; transcription factor bHLH75-like isoform X3
STRING	XP_009797952.1	1e-100	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	4e-37	bHLH family protein