PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489997.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 478aa    MW: 53266.3 Da    PI: 9.966
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-07382428447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_016489997.1 382 FSIYEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 428
                      5666889****************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.31374433IPR017930Myb domain
SMARTSM007171.0E-4378431IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-10379429IPR009057Homeodomain-like
SuperFamilySSF466891.37E-15380461IPR009057Homeodomain-like
CDDcd116604.05E-17380430No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MCQIMQRFSA QSFLIFGIGN LQILLLRYNT VKLSLSTDPD PFGSFPVIRN DVKLATKDDD  60
ENSCGCAQPS TRNKAFRPTP RVGDFRMRKL RDVNPKFEYK GHVNVDSETG HAYQNRSQRD  120
FPFKKRKLYY CNSFSNSDGG SSDRICSSPT KDINRDAAGY SLASSGACAV AGTSISRGAR  180
SSFRSSDSHV KLKIKSFRVP ELFVEIPENA TRTVMEAVTA ILGGGLHIGV IFQGKKVRDD  240
NKTLLQAGIS HDDKLDALGF TLEPKHSRAS STLGPESHSH VLPCDTPQPL TRGPPTPAVI  300
CNGIRQGTYN AFSDHPETNL SNFIESDHDS APSPPDASLE KDAADSRALV PVAAVNAEAL  360
DVVPMRKPKR SETAQRRIRR PFSIYEVEAL VQAVEKLGTG RWRDVKMRAF DNAKHRTYVD  420
LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLIAHAYWS QKQAKQHMKH QSETRLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-573664694107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117126QRDFPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-100HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489997.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
SwissprotQ6R0E31e-122TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A1S4BMD30.0A0A1S4BMD3_TOBAC; telomere repeat-binding protein 5-like isoform X2
STRINGXP_009629784.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-124TRF-like 2