PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490087.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 256aa    MW: 29443.2 Da    PI: 6.9245
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM691.3e-21121393127
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +G+rFhPt+ el+ ++Lk+ ++g++l+ e   ++ +diy    Pw++  ++ ++ e+++ yf ++ +k +++ +r +r+ ++g+Wk +    +++
  XP_016490087.1  12 MGVRFHPTEAELI-NFLKRFLKGEPLPSECPnFQLADIYGDqPPWKIFgANSDHPEEKVhYFLTRLKKPKSEHTRVRRTCANGTWKGQTGIDSIK 105
                     7************.9**********88755559999***87368***744444444455255555566666799999999******777778999 PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                     + kg++vg ++++ f + +++  ++  W+m+ey 
  XP_016490087.1 106 NGKGTVVGFRRSFKFQSSTKEGENNKIWLMKEYF 139
                     99*************988888778899******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-259162IPR003441NAC domain
PROSITE profilePS5100525.2510163IPR003441NAC domain
PfamPF023652.4E-1412138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSTVAAARRR IMGVRFHPTE AELINFLKRF LKGEPLPSEC PNFQLADIYG DQPPWKIFGA  60
NSDHPEEKVH YFLTRLKKPK SEHTRVRRTC ANGTWKGQTG IDSIKNGKGT VVGFRRSFKF  120
QSSTKEGENN KIWLMKEYFV GDDFFRENNI PKEDIVVCRI KKNTRSEKNH GVNMEEQDVA  180
NVIGAMLHGR DKDYCTTVQP ITICEAAKHQ VMDEAQKMNE HNNSSYTNDC SNYQEEINWA  240
DEVLLDIDDF GDIICC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7532600.0EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789986.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016490087.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1S4BMM20.0A0A1S4BMM2_TOBAC; NAC domain-containing protein 78-like
TrEMBLA0A1U7XK540.0A0A1U7XK54_NICSY; NAC domain-containing protein 78-like
STRINGXP_009789986.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-14NAC domain containing protein 2