PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016490571.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 169aa MW: 19071.4 Da PI: 4.3333

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016490571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.7	7.4e-12	60	142	6	96
..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 t+ v + ++lp+k +e + + + ++W++ + ++++ +++ Wk+Fv++n+Lk+gD +vF+l++ s+ + ++kv XP_016490571.1 60 TKTTVKPHYGMYLPRKMNKELpaA----G--APAVLTCGRKKWDMFYYSNNNK----FSAEWKKFVDDNDLKVGDALVFELSECSTNKIHFKV 142 556666777788888887666431....2..234556788*****334444....7888*****************9854666555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.46E-16	51	146	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.4E-13	52	146	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.616	55	148	IPR003340	B3 DNA binding domain
CDD	cd10017	9.93E-17	58	146	No hit	No description
Pfam	PF02362	1.3E-9	59	140	IPR003340	B3 DNA binding domain
SMART	SM01019	5.1E-7	59	148	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MEQELQLSVE TAMESIPSSV HVSNHDDIST PEIESTGIEE IDNGEYWPLS GKPYVDIILT 60 KTTVKPHYGM YLPRKMNKEL PAAGAPAVLT CGRKKWDMFY YSNNNKFSAE WKKFVDDNDL 120 KVGDALVFEL SECSTNKIHF KVQILRGDFP SELLPEDEEG ATDANPIEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786634.1	1e-124	PREDICTED: B3 domain-containing protein Os04g0386900-like
Refseq	XP_016490571.1	1e-124	PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A1S4BNV1	1e-123	A0A1S4BNV1_TOBAC; B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A1U7XI63	1e-123	A0A1U7XI63_NICSY; B3 domain-containing protein Os04g0386900-like
STRING	XP_009786634.1	1e-123	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1819	21	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-08	B3 family protein