PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016490629.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 275aa MW: 29802.5 Da PI: 10.9833

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016490629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.5	1.6e-36	95	181	6	89
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...k 89 ++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlq a+p+i+ +tgt++++a +++ + s++ +++ + k XP_016490629.1 95 TSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKTDGETIQWLLQHAEPSIISATGTGTTPAIAVSVNGSVEIPTTKNGPltrK 181 689*********************************************************999996663333333333233333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-31	95	173	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.684	97	151	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEAAQTHSIP MESKNTNNIN KSYMAAPPSA RRRQVAPPIA TPLISPKQEP HDMAEKPPAP 60 PIIKVTLPTP TLKQSVSPPH MPPSPPPTPH NKAVTSTKDR HTKVEGRGRR IRMPATCAAR 120 VFQLTRELGH KTDGETIQWL LQHAEPSIIS ATGTGTTPAI AVSVNGSVEI PTTKNGPLTR 180 KRKRCTTNSE FINVKQRSNC HAIMTTCSPS TIDVKCNKVT TIFAPVMSIV PSQTILPHVS 240 MFAVPTRINS MAAASPVWII PQTPLITRTP SVADQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016490629.1	0.0	PREDICTED: transcription factor TCP9-like, partial
TrEMBL	A0A1S4BP29	0.0	A0A1S4BP29_TOBAC; transcription factor TCP9-like
STRING	XP_009803790.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-48	TCP family protein