PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016490632.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 252aa MW: 28205 Da PI: 8.6382

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016490632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_016490632.1 102 FSCNYCQRKFYSSQALGGHQNAH 124 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.66E-6	99	129	No hit	No description
PROSITE profile	PS50157	11.427	102	129	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	104	124	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MVTLKRDVHL HPKGGQDALS SSSSSSCQDE RNYHKQEEDH QNAIEDIRLR GKSNGDGDGD 60 DDESDHRKNN QELNLLERLN TNKSPICNEN DPTSDGAEPR VFSCNYCQRK FYSSQALGGH 120 QNAHKRERTL AKRAGQRPIG HHLFNFTPAA AAAAFGHHPY LRVQHQNNYN FVSSMSTLPL 180 NGANNQNNSL GIQAHSMIHK TTNSSGNWSN RQFIKHQPGV GKLSVIPKGN IHFIPQEENK 240 SDLQKIDLSL KL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767947.1	0.0	PREDICTED: zinc finger protein 1-like
Refseq	XP_016490632.1	0.0	PREDICTED: zinc finger protein 1-like
TrEMBL	A0A1S4BP17	0.0	A0A1S4BP17_TOBAC; zinc finger protein 1-like
TrEMBL	A0A1U7VIQ6	0.0	A0A1U7VIQ6_NICSY; zinc finger protein 1-like
STRING	XP_009767947.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15739	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	4e-32	zinc-finger protein 1