PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490862.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 405aa    MW: 45447.4 Da    PI: 6.4285
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44e-30219278159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_016490862.1 219 MNDGCHWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCVEDMSILITTYEGTHNHP 278
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-32204280IPR003657WRKY domain
SuperFamilySSF1182901.44E-27213280IPR003657WRKY domain
PROSITE profilePS5081129.207214280IPR003657WRKY domain
SMARTSM007743.5E-36219279IPR003657WRKY domain
PfamPF031069.9E-27220278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDNSRKFGSD EKIETIDLSL KLDHEELSNE VNSSRELSQF DAKIQSKEKE FGKNSKREEF  60
SVLQKEMNMM KEENKVLREA VEQTMKDYYD LQKKFSNTQQ NNGKKDPKDL LSLHGTYCID  120
FDMNKRTDSP ASQENDIGDG ELGLSLTLLS SGSNASKVEA DEERKEKQED ATTTGYLPIQ  180
SSNNSHGSNF GGITSQVMNS PPNRKARVSI RAKCEAATMN DGCHWRKYGQ KIAKGNPCPR  240
AYYRCTVAPG CPVRKQVQRC VEDMSILITT YEGTHNHPLP VAMASTAGSF TLVDSSINPL  300
LSNGTSNLLN QTFFPSPYHI INSSSSPYTS NLRNNLYNHE QYPIVNSFSN TSLSEAAQLG  360
NSWFPKPSNY ERNTIGNNIF TAYKLADIIH NEMGPQFEGN NNNYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22206280174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490862.10.0PREDICTED: probable WRKY transcription factor 9 isoform X2
SwissprotQ9C9F05e-70WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A1S4BPP80.0A0A1S4BPP8_TOBAC; probable WRKY transcription factor 9 isoform X2
STRINGXP_009606133.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.15e-67WRKY DNA-binding protein 9