PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490907.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 221aa    MW: 25794.7 Da    PI: 4.5504
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182474656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +ft+eq++ Le +F+ + ++  +++ eLA+ lgL+ rqV +WFqNrRa++k
  XP_016490907.1 24 RFTDEQVKLLEFMFKLETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWK 74
                    7*************************************************9 PP
2HD-ZIP_I/II117.86e-3823112493
     HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +r+++eqvklLE +F+ e+kLep++K elar+Lglqprqva+WFqnrRAR+k+kq+E++y++Lk+++d l+ + e+L++e+e+L ++l+e
  XP_016490907.1  23 KRFTDEQVKLLEFMFKLETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWKSKQMEHEYRVLKAEFDGLNMQFESLKQEKESLLKQLEE 112
                     8************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-181177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-191483IPR009057Homeodomain-like
PROSITE profilePS5007117.2321676IPR001356Homeobox domain
SMARTSM003891.1E-151880IPR001356Homeobox domain
PfamPF000463.9E-162474IPR001356Homeobox domain
CDDcd000864.78E-142477No hitNo description
PRINTSPR000313.6E-64756IPR000047Helix-turn-helix motif
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PRINTSPR000313.6E-65672IPR000047Helix-turn-helix motif
PfamPF021831.6E-1376117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEAEDTLTQG NTEPSNKKSK DGKRFTDEQV KLLEFMFKLE TKLEPRKKLE LARDLGLQPR  60
QVAIWFQNRR ARWKSKQMEH EYRVLKAEFD GLNMQFESLK QEKESLLKQL EELNDQLENN  120
HAGCSRSQDS LDSEIYTSSE NGGTDLELKD NIIPGCLNAS LEDKRVEEVE NDREGTLIEH  180
FRWKEEPEFW NMEELGDSSL GSPGRWCAVG LGRTFDLSWE F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876RRARWKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601707.11e-161PREDICTED: homeobox-leucine zipper protein ATHB-7-like
RefseqXP_016490907.11e-161PREDICTED: homeobox-leucine zipper protein ATHB-7-like
SwissprotP468972e-39ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A1S4BPU41e-159A0A1S4BPU4_TOBAC; homeobox-leucine zipper protein ATHB-7-like
STRINGXP_009601707.11e-160(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.22e-35homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]