PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016491317.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CAMTA

Protein Properties

Length: 901aa MW: 100704 Da PI: 7.0139

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016491317.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	171.9	9e-54	70	184	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e + rwl++ e++ iL+n+e +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr XP_016491317.1 70 REgRFRWLRPAEVLFILQNHEDQQLANQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAETLNCYYAHGEKNPNFQR 164 56689**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhyle 116 r+yw+L+ ++e+ivlvhy++ XP_016491317.1 165 RSYWMLDPAYEHIVLVHYRD 184 ****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.183	65	191	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.0E-74	68	186	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-47	73	184	IPR005559	CG-1 DNA-binding domain
CDD	cd00603	0.00236	459	517	No hit	No description
Gene3D	G3DSA:2.60.40.10	1.0E-5	461	521	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	5.1E-5	461	521	IPR002909	IPT domain
SuperFamily	SSF81296	5.18E-12	461	522	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	14.265	623	715	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.9E-15	623	717	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.55E-15	627	717	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.44E-13	628	715	No hit	No description
Pfam	PF12796	5.3E-7	638	716	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.992	656	688	IPR002110	Ankyrin repeat
SMART	SM00015	64	773	795	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.876	774	803	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	1.2	832	854	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	833	862	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0031	835	853	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 901 aa Download sequence Send to blast
MTELYNKQPT IAPVSSPNTK TVKYSRFQVG SGNRILNERG RERAILHHRE ILLLRISMAE 60 SGYNINNLVR EGRFRWLRPA EVLFILQNHE DQQLANQPPQ KPASGSMFLF NKRVLRYFRK 120 DGHSWRKKKD GRTVGEAHER LKVGNAETLN CYYAHGEKNP NFQRRSYWML DPAYEHIVLV 180 HYRDITEGMQ IAAFMSQSSP ISSTFSLSPS LYSTQHPGFT VVGSESYQQY QNESSPGSGE 240 ICSGAGINSN GMNISDITGR TEGVSSSPQV EISQALRKLE EQLSLNETDP LYSEIENSDD 300 VENFGHDNSS LVQIQHKSNN LLLQPYSGES SESQHQLLNL DGDIWKEMLD HCRSFPAAES 360 QDKCFEKLDE NGTLQTLSGM GPIEVTESDR WLKFGGKEAL KSSLTNFKQV EDFKYPACAR 420 INTYGSYSDQ YTTIFDQDLI GTSFEDDMSL TIAQKQKFTF HDISPDWGYS SEATKVMIVG 480 SFLCNPSEYT WTCMFGDIEV PVQIIKEGAI RCQAPPHLPA EVGGACKSSE ELLHLVRFVQ 540 MLLSDSSVQK GDGSGSSNDI LENSKASEDS WSQVIESLLF GTSTSMVTVD WLLQELLKDK 600 LQQWLSSKLQ VQNNQMGYSF SRKEQGIIHM VAVLGFEWAL QPILDAGVSV NFRDINGWTA 660 LHWAARFGRE KMVASLVASG AFAGAVTDPS SQDPFGKTAA SIASSCGHKG VAGYLSEVAL 720 TSHLSSLTLE ESELSKGAAD VEAERTISSI STTNAATHED QLSLKDTLAA VRNAAQAAAR 780 IQSAFRAHSF RKRRQREAAR AATTSGDEYC VLSNDVLGLS AASKLAFRNM RDYNSAALAI 840 QKKYRGWKCR KGFLAFRQKV VKIQVLYLFE SRIDISTSFV TTYKIKDDRS KKKRCHQFRC 900 Y

Sequence ? help Back to Top

Protein Sequence Length: 901 aa Download sequence Send to blast

MTELYNKQPT IAPVSSPNTK TVKYSRFQVG SGNRILNERG RERAILHHRE ILLLRISMAE  60
SGYNINNLVR EGRFRWLRPA EVLFILQNHE DQQLANQPPQ KPASGSMFLF NKRVLRYFRK  120
DGHSWRKKKD GRTVGEAHER LKVGNAETLN CYYAHGEKNP NFQRRSYWML DPAYEHIVLV  180
HYRDITEGMQ IAAFMSQSSP ISSTFSLSPS LYSTQHPGFT VVGSESYQQY QNESSPGSGE  240
ICSGAGINSN GMNISDITGR TEGVSSSPQV EISQALRKLE EQLSLNETDP LYSEIENSDD  300
VENFGHDNSS LVQIQHKSNN LLLQPYSGES SESQHQLLNL DGDIWKEMLD HCRSFPAAES  360
QDKCFEKLDE NGTLQTLSGM GPIEVTESDR WLKFGGKEAL KSSLTNFKQV EDFKYPACAR  420
INTYGSYSDQ YTTIFDQDLI GTSFEDDMSL TIAQKQKFTF HDISPDWGYS SEATKVMIVG  480
SFLCNPSEYT WTCMFGDIEV PVQIIKEGAI RCQAPPHLPA EVGGACKSSE ELLHLVRFVQ  540
MLLSDSSVQK GDGSGSSNDI LENSKASEDS WSQVIESLLF GTSTSMVTVD WLLQELLKDK  600
LQQWLSSKLQ VQNNQMGYSF SRKEQGIIHM VAVLGFEWAL QPILDAGVSV NFRDINGWTA  660
LHWAARFGRE KMVASLVASG AFAGAVTDPS SQDPFGKTAA SIASSCGHKG VAGYLSEVAL  720
TSHLSSLTLE ESELSKGAAD VEAERTISSI STTNAATHED QLSLKDTLAA VRNAAQAAAR  780
IQSAFRAHSF RKRRQREAAR AATTSGDEYC VLSNDVLGLS AASKLAFRNM RDYNSAALAI  840
QKKYRGWKCR KGFLAFRQKV VKIQVLYLFE SRIDISTSFV TTYKIKDDRS KKKRCHQFRC  900
Y

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566047	0.0	JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016491317.1	0.0	PREDICTED: calmodulin-binding transcription activator 4-like, partial
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A1S4BQZ8	0.0	A0A1S4BQZ8_TOBAC; calmodulin-binding transcription activator 4-like
STRING	XP_009803068.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]