PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491547.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 236aa    MW: 25583 Da    PI: 7.8877
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260958.5e-304107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g+++++++ql+q+
  XP_016491547.1   4 SCNGCRVLRKGCNEKCSIKPCLqwiksPEAQSNATLFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLLTSGNWQLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_016491547.1  99 AVEAVLSGA 107
                     **9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6153109IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCNEKCS IKPCLQWIKS PEAQSNATLF LAKFYGRAGL LNLINSGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLSGASIE KLSPDSAANT  120
VCPSLKACDI RHLSKANDST PDLHKVKMRT KFKRVSAKPQ QRNQSPEVDD AARVMWSWSH  180
MEEEAIGSPS RDSGLSQQRD GESGDADSGS VETVEASLAK LDESDVGLEL TLGCSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792341.11e-175PREDICTED: LOB domain-containing protein 41-like
RefseqXP_016491547.11e-175PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8868e-76LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1S4BRN61e-173A0A1S4BRN6_TOBAC; LOB domain-containing protein 41-like
TrEMBLA0A1U7XRS61e-173A0A1U7XRS6_NICSY; LOB domain-containing protein 41-like
STRINGXP_009792341.11e-174(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-78LOB domain-containing protein 41