PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492181.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 255aa    MW: 28560.7 Da    PI: 8.2048
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492181.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-1356102354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr llP+       K +Ka+ L +Av+++++L
  XP_016492181.1  56 KSHSEAERRRRKRINGHLATLRNLLPNT-----IKTDKASLLAEAVRCVREL 102
                     69*************************8.....6**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.30753102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-1056102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1356113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.88E-1156104No hitNo description
SuperFamilySSF474591.1E-1357113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1159108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00254165230No hitNo description
SuperFamilySSF550212.9E-6165233No hitNo description
Gene3DG3DSA:3.30.70.2607.3E-7165233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MINHSFPSFY ELGGCSDSYN FLHGIINSSP EMFNVESSSV VSPRSMAEAK AIAANKSHSE  60
AERRRRKRIN GHLATLRNLL PNTIKTDKAS LLAEAVRCVR ELKKTTSELG ATMSEDDDNT  120
DDFMNYMGSN DQTTMKKFIF PSESDELNLS YCNSNNSGTL LAKATICCED RPEIMMDLRR  180
ALSTVQGKII RAEMATVGGR IKCILWVQML ENGCREEGLG QLRRALKLVM DKANFLAQNM  240
GQDLLGNKRP RLYQC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-52HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755163e-52HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773084.10.0PREDICTED: transcription factor bHLH30-like isoform X2
RefseqXP_016492181.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1S4BTH50.0A0A1S4BTH5_TOBAC; transcription factor bHLH30-like
TrEMBLA0A1U7WEL20.0A0A1U7WEL2_NICSY; transcription factor bHLH30-like isoform X2
STRINGXP_009773083.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-37bHLH family protein