PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016492392.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YB

Protein Properties

Length: 185aa MW: 20670.1 Da PI: 6.632

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016492392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	103.8	1.2e-32	1	79	17	95
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 m+++lP++ak+s+dake +qe vsefi +t+ a+++c+re+r+t++++d++wa+ ++G+ +yv pl++yl+k+re e+ XP_016492392.1 1 MRRILPQHAKVSDDAKEAIQELVSEFINHITNLANERCHREQRRTVTAEDVIWAMNKIGLTNYVGPLTLYLQKHREQEA 79 89**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.08E-26	1	85	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.9E-33	1	85	IPR009072	Histone-fold
Pfam	PF00808	5.7E-16	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.7E-9	19	37	No hit	No description
PRINTS	PR00615	3.7E-9	38	56	No hit	No description
PRINTS	PR00615	3.7E-9	57	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MRRILPQHAK VSDDAKEAIQ ELVSEFINHI TNLANERCHR EQRRTVTAED VIWAMNKIGL 60 TNYVGPLTLY LQKHREQEAS GQRIRPNTVR PNVELGLARR TGSAQVLPIN YAPGPGYSYP 120 HFPPTGVFYD PAVHVMMNGF NDMINYMRSE EEIGENDGPA ESSSSTATNY GVPAGVNDPN 180 GHLKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-34	1	76	22	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016492392.1	1e-137	PREDICTED: nuclear transcription factor Y subunit B-6-like
TrEMBL	A0A1S4BU35	1e-136	A0A1S4BU35_TOBAC; nuclear transcription factor Y subunit B-6-like
STRING	XP_009784547.1	1e-135	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16246	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	5e-36	nuclear factor Y, subunit B6