PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492808.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 241aa    MW: 27141.5 Da    PI: 6.4117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.9e-053584154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +r+ + erE+  R+++N+ f  L   l  +     + + Ka+iL +A +++k++
  XP_016492808.1 35 KRVHKAEREKLKREHLNELFLGLANALELS----EQMNGKASILNEAARFVKDM 84
                    79999**********************998....68899*********999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1031104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-43289No hitNo description
PROSITE profilePS5088810.6713484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-735108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDTENPPIVE KDTTAVETSL DSSHLGKKNQ KKAPKRVHKA EREKLKREHL NELFLGLANA  60
LELSEQMNGK ASILNEAARF VKDMLSQIKH LRTENTTLLS ESQYLSVEKK ELQDETSALE  120
AEIGRLQNEV KAREAETNLD LNLAPPEIQH PEFASHNNYM RLPASEHAFQ DSQIMNPAYV  180
FPFSSNSQVY PAPDATKSTA TPTSTVKKPQ PRYPTPADVW PSQIFEKRPR LLGQEVQDGA  240
K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4230780.0DQ423078.2 Nicotiana tomentosiformis cultivar TA3349 DNA-binding protein (At3g47640) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612854.11e-178PREDICTED: transcription factor bHLH47-like
RefseqXP_009612855.11e-178PREDICTED: transcription factor bHLH47-like
RefseqXP_016492808.11e-178PREDICTED: transcription factor bHLH47-like
RefseqXP_016492809.11e-178PREDICTED: transcription factor bHLH47-like
RefseqXP_018629631.11e-178PREDICTED: transcription factor bHLH47-like
RefseqXP_018629632.11e-178PREDICTED: transcription factor bHLH47-like
TrEMBLA0A1S4BVF11e-177A0A1S4BVF1_TOBAC; transcription factor bHLH47-like
STRINGXP_009612854.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43071934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-46bHLH family protein