PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492941.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 316aa    MW: 35240 Da    PI: 7.7983
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-31157215259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+++WrKYGqK++kgs++pr+YY+C+++ gC ++k+ver+++dp++++itY+ eHnh+
  XP_016492941.1 157 SDKWSWRKYGQKPIKGSPYPRGYYKCSTSkGCLARKQVERNRSDPNMFIITYTAEHNHP 215
                     79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-31144216IPR003657WRKY domain
PROSITE profilePS5081133.66151217IPR003657WRKY domain
SuperFamilySSF1182903.14E-26154216IPR003657WRKY domain
SMARTSM007741.6E-36156216IPR003657WRKY domain
PfamPF031066.5E-26158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEEDWDLHAV VRSCAAANST TTTTTSSSGS ATISSCKFQP RLDDINSFCF QDLSFDPRFT  60
TQNTAFEELH ELCKPFFNGS PLQKSPLISP QRLLQDLPQR QQQQQQLNQL NTKLIQPIKR  120
SLSSVNGATL HAQSPRSKRR KNQMKKVCQV AADALSSDKW SWRKYGQKPI KGSPYPRGYY  180
KCSTSKGCLA RKQVERNRSD PNMFIITYTA EHNHPMLTHR NSLAGISRHN KETNSNKTTS  240
SSPVSSPATN SPAPENQESS RDEKEDIFED ENDDFFEGLE ELESPAAGDS LPENFPGTLQ  300
FPWMTNNAAT TAAGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-20141215277Disease resistance protein RRS1
5w3x_D4e-20141215277Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754494e-61HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492941.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1S4BVN00.0A0A1S4BVN0_TOBAC; WRKY transcription factor 22-like
STRINGXP_009758175.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-56WRKY family protein