PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016493041.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 261aa MW: 27525 Da PI: 10.5886

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.3	5.4e-38	34	131	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa. 95 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ss+ ++ sa+ XP_016493041.1 34 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFS-TVSVSVRSSSSSILTSSISAPl 127 689******************************************************************888.2333333332333322222221 PP TCP 96 kskk 99 +k+ XP_016493041.1 128 DHKQ 131 2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.613	40	94	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.5E-34	41	128	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MSTSAEGNGA IIDPHQRQQQ QNPSGGGGTN GALTVKKPPV KDRHSKVDGR GRRIRMPIVC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTI PASFSTVSVS VRSSSSSILT 120 SSISAPLDHK QPPSSQPLIS PAPFILGKRL RPDDESIENG NKEDVGPAAT VVGPTSGFWA 180 VPARPDFGQV WSFAAAPPEM MAPTSAALSL QSSRFFQQQM GEASAARVGN YLPMTQGHLN 240 LLASLSGPLQ PSSGRRDADG R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016493043.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493044.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493045.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493046.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493047.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493048.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493049.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493050.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493051.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493052.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493053.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493054.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493055.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493056.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493057.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493059.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493060.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493061.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493062.1	0.0	PREDICTED: transcription factor TCP7-like
Refseq	XP_016493063.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	2e-89	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1S4BVZ2	0.0	A0A1S4BVZ2_TOBAC; transcription factor TCP7-like
STRING	XP_009588219.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-81	TCP family protein