PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016493190.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 169aa MW: 19396.2 Da PI: 5.9576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493190.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.6e-07	88	132	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ +eL +l+P kK++ a + + A +YI+ Lq XP_016493190.1 88 SIAARQRRKKITEKTHELGKLIPGG-----KKMNTAVMFQAAYKYINFLQ 132 6788*****************87.....8***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.10E-8	80	135	No hit	No description
PROSITE profile	PS50888	12.265	82	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-11	83	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-11	85	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-9	88	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-5	88	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MTVDDQLLLG FKDESFPILD RSTCFLEPLY NSNDLFLPQV KIFQDNNYFN GFVPMLPEFE 60 SLPVYKSENG LGTKESSKCN EKNLSAQSIA ARQRRKKITE KTHELGKLIP GGKKMNTAVM 120 FQAAYKYINF LQAQVGILQF MASYQEEREL FQTPQICWIS INSGEVVFQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016493190.1	1e-124	PREDICTED: transcription factor bHLH52-like
TrEMBL	A0A1S4BWD8	1e-122	A0A1S4BWD8_TOBAC; transcription factor bHLH52-like
STRING	XP_009795118.1	1e-122	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3856	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	3e-21	bHLH family protein