PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493223.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23057.4 Da    PI: 10.4047
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-181755442
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +n+sn qvtfskR +g++KKA+ L++LC+aeva++ ++ 
  XP_016493223.1 17 QNESNLQVTFSKRHAGLFKKASDLCTLCGAEVAIVWIGF 55
                    79*********************************9983 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.264651IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-17656IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-18666IPR002100Transcription factor, MADS-box
CDDcd001204.85E-20758No hitNo description
PRINTSPR004041.2E-10828IPR002100Transcription factor, MADS-box
PfamPF003194.8E-181554IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-102843IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-104364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAKRSKGRQK VDMVKMQNES NLQVTFSKRH AGLFKKASDL CTLCGAEVAI VWIGFSQGTL  60
NQIMGHNQLI VAHRNASVRD LNMEFTNIEG ILQMGKNCRE ALQARKRDNS HWWEAPIKEL  120
SFFQLQQLKE AMESIKKKVE REAQNQQMVT SNAFPFLTFG SALDPIGARA RSSYGSFPFQ  180
NKVSRHNFGA PFANRACGCT SSEVP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016493223.11e-153PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1S4BWJ51e-152A0A1S4BWJ5_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009601691.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-37AGAMOUS-like 62