PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493330.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 242aa    MW: 27784.9 Da    PI: 7.4609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G  +W+  +++ g+ R++k+c++rw +yl
   XP_016493330.1 14 KGTWTPEEDRKLAAYVTKYGCWNWRQLPKHAGLARCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding60.43.9e-1967110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eEd++++++++qlG++ W+tIa++++ gR+++++k++w++
   XP_016493330.1  67 RGNYTKEEDDIILKLHAQLGNR-WSTIAAHLP-GRSDNEIKNHWHT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.663961IPR017930Myb domain
SuperFamilySSF466891.24E-3011108IPR009057Homeodomain-like
SMARTSM007171.3E-101363IPR001005SANT/Myb domain
PfamPF002498.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-241568IPR009057Homeodomain-like
CDDcd001671.00E-91661No hitNo description
PROSITE profilePS5129426.98462116IPR017930Myb domain
SMARTSM007177.5E-1866114IPR001005SANT/Myb domain
PfamPF002491.1E-1667110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2669115IPR009057Homeodomain-like
CDDcd001671.47E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVRTTSYDEN GKKKGTWTPE EDRKLAAYVT KYGCWNWRQL PKHAGLARCG KSCRLRWMNY  60
LRPNIKRGNY TKEEDDIILK LHAQLGNRWS TIAAHLPGRS DNEIKNHWHT SLKKRANYYA  120
PNSSDSESKS MNEASGTRRK SVENQNAISP TNLELSSQMS PKQSSSEQLS CYTTDYQVIQ  180
EEGILMENSG SFWTEPFLVD TSFSSRSTDY VVPSIDWELV CPPSPFIGHE FLSSFDLDDY  240
NC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30141177109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-44HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800612.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_016493330.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1S4BWQ20.0A0A1S4BWQ2_TOBAC; myb-related protein Myb4-like
TrEMBLA0A1U7Y9170.0A0A1U7Y917_NICSY; myb-related protein Myb4-like
STRINGXP_009800612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-56myb domain protein 15