PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493370.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 548aa    MW: 60224.9 Da    PI: 8.5561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.3e-17253302255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f +Lre++P++    ++K +Ka+ L ++veYI+ Lq
  XP_016493370.1 253 RSKHSATEQRRRSKINDRFLKLREIIPHS----DQKRDKASFLLEVVEYIQFLQ 302
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.1E-23248322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-18249315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.622251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-15253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-14253306No hitNo description
SMARTSM003534.6E-13257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MELPQSRTFG AEGRKKTHDF LSLYSPIEQD PRPPQGGHLK THDFLQPLEQ ARKTVGKAET  60
KVEVEAIEKT PSAAHILPGG IGTYSISYLQ QRIPTPEANI FAVTQASSTD REDRNSNCSS  120
YSGSGFAIWN ESAIKKGKTG KENVAGDRHV LREAGVNIGG GKPTTSLERQ SQLSSNHNHN  180
TATLSTLSSA QQSSAVENQS FLNMMRSAKN AHEEDDDEEE EFIVKKESPS HSRGDLSVKV  240
DRKSSDQKPN TPRSKHSATE QRRRSKINDR FLKLREIIPH SDQKRDKASF LLEVVEYIQF  300
LQEKVHKYEG SYQGSENKPS TLQWNKCQRM TQGFVDQSQG TNSASSPAII CAGMFDESKI  360
AISATSPVNG QTLEPNRISA VKQSSQQSEL TNTVATLCKQ PNAFPFCGST SIASLQSRLA  420
PDADSLELKS QPQFWLTRSD MTDCAVTNDK LKGQEASIEG GTISISSVYS QRLLNTLKQA  480
LQSSGVDLSQ ASMSVKIDLG KRVNDSLNAS VSNFKGDNIS TSNRPNPQLI DSSTREESVH  540
AFKRLKTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-113HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793272.10.0PREDICTED: transcription factor BIM1-like isoform X1
RefseqXP_016493370.10.0PREDICTED: transcription factor BIM1-like isoform X1
TrEMBLA0A1S4BWU10.0A0A1S4BWU1_TOBAC; transcription factor BIM1-like isoform X1
TrEMBLA0A1U7XMJ40.0A0A1U7XMJ4_NICSY; transcription factor BIM1-like isoform X1
STRINGXP_009793272.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.44e-95bHLH family protein