PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016494286.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 668aa MW: 72168 Da PI: 6.8631

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016494286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	453	490	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_016494286.1 453 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 490 664559******************************88 PP
2	BELL	122.4	1.9e-39	314	385	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ XP_016494286.1 314 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAIPYTALAQKAMSRHFRCLKDAITAQL 385 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.7E-80	240	383	IPR006563	POX domain
Pfam	PF07526	8.1E-54	245	382	IPR006563	POX domain
PROSITE profile	PS50071	12.568	431	494	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	434	498	IPR001356	Homeobox domain
CDD	cd00086	6.01E-13	434	495	No hit	No description
SuperFamily	SSF46689	2.99E-17	435	501	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.7E-29	437	500	IPR009057	Homeodomain-like
Pfam	PF05920	3.3E-18	451	490	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
GLPVYDQTAG MLSEMFSFPP GTSSELLEAQ FNPNYRHPNP KIPPPAGMGN EWFGNRQGMV 60 VPLGYAKNHN NQISSAGINA AESMQLFLMN PQPRSPSPSP SHPPPPPSTN SSTLHMLLPN 120 PSSTSTIEGF PNPAEGSFGQ FTWGNNGGAS ASLNTPNEIG AGVNHVVESQ GLSLSLSSSL 180 QHKVEELRMG EESGMLFFNQ GGGGSTTSGQ FRYKNLNIGN SGVVGQNIHQ QVHVGYGSSL 240 GVVNVLRNSK YAKAAQELLE EFCSVGRGKF KKNNKATAAN PNSNNPSGGT NGGGGNNNTS 300 SSSSKDLPPL SAADRIEHQR RKVKLLSMLD EVDRRYNHYC EQMQMVVNSF DLVMGFGAAI 360 PYTALAQKAM SRHFRCLKDA ITAQLKHSCE LLGDKDAGTS GLTKGETPRL KMLEQSLRQQ 420 RAFHQMGMME QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKHLLA RQTGLSRNQV 480 SNWFINARVR LWKPMVEEMY QQEAKEEEEE DDERENSQNQ NSGNNAQTPT PNMSNSSSTN 540 MTTTTTALGA AAAAAETGTA ATATTATAAS TLGKRSEINA PENDPSLVAI NSHISFSENQ 600 ATFPTNIHDS DAAACRRGGK FFGDDYGTTT NADVGSTMIR FGTTSGDVSL TLGLRHAGNL 660 PENTHFFG

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

GLPVYDQTAG MLSEMFSFPP GTSSELLEAQ FNPNYRHPNP KIPPPAGMGN EWFGNRQGMV  60
VPLGYAKNHN NQISSAGINA AESMQLFLMN PQPRSPSPSP SHPPPPPSTN SSTLHMLLPN  120
PSSTSTIEGF PNPAEGSFGQ FTWGNNGGAS ASLNTPNEIG AGVNHVVESQ GLSLSLSSSL  180
QHKVEELRMG EESGMLFFNQ GGGGSTTSGQ FRYKNLNIGN SGVVGQNIHQ QVHVGYGSSL  240
GVVNVLRNSK YAKAAQELLE EFCSVGRGKF KKNNKATAAN PNSNNPSGGT NGGGGNNNTS  300
SSSSKDLPPL SAADRIEHQR RKVKLLSMLD EVDRRYNHYC EQMQMVVNSF DLVMGFGAAI  360
PYTALAQKAM SRHFRCLKDA ITAQLKHSCE LLGDKDAGTS GLTKGETPRL KMLEQSLRQQ  420
RAFHQMGMME QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKHLLA RQTGLSRNQV  480
SNWFINARVR LWKPMVEEMY QQEAKEEEEE DDERENSQNQ NSGNNAQTPT PNMSNSSSTN  540
MTTTTTALGA AAAAAETGTA ATATTATAAS TLGKRSEINA PENDPSLVAI NSHISFSENQ  600
ATFPTNIHDS DAAACRRGGK FFGDDYGTTT NADVGSTMIR FGTTSGDVSL TLGLRHAGNL  660
PENTHFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	8e-17	440	497	1	58	Homeobox protein Meis1
4xrs_B	8e-17	440	497	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406699	0.0	AF406699.1 Solanum tuberosum BEL1-related homeotic protein 13 (Bel13) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016494286.1	0.0	PREDICTED: BEL1-like homeodomain protein 2, partial
Swissprot	Q9SW80	1e-166	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1S4BZF5	0.0	A0A1S4BZF5_TOBAC; BEL1-like homeodomain protein 2
STRING	XP_009776283.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-137	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]