PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494297.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 543aa    MW: 61658.8 Da    PI: 9.7329
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19104153154
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     ++y+GVr++k +g+W+AeIrd      +++r +lg+f+taeeAa a+++a+ +++
  XP_016494297.1 104 KKYRGVRQRK-WGKWAAEIRDaR----RKTRLWLGTFDTAEEAALAYDKAAIEIR 153
                     59*******9.**********55....35**********************9987 PP
2AP259.77.1e-19462512256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr++k +g+W+AeIrd +   kr+r +lg+++ta+eAa a+++a+ +++g+
  XP_016494297.1 462 KYRGVRQRK-WGKWAAEIRDTR---KRTRTWLGTYDTAYEAALAYDKAAIEIRGA 512
                     8*******9.**********42...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-27104153No hitNo description
PfamPF008472.1E-14105154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-25105155IPR001471AP2/ERF domain
SMARTSM003808.2E-27105165IPR001471AP2/ERF domain
PROSITE profilePS5103221.074105166IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-18105153IPR016177DNA-binding domain
PRINTSPR003675.3E-11106117IPR001471AP2/ERF domain
PRINTSPR003675.3E-11128144IPR001471AP2/ERF domain
CDDcd000181.26E-29462517No hitNo description
PROSITE profilePS5103221.575462519IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-19462518IPR016177DNA-binding domain
PfamPF008471.8E-13462511IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-27462517IPR001471AP2/ERF domain
SMARTSM003801.0E-32462525IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MASQQEHQKK EAVEKPPEID VVEKSNNQVG ESSGTLPHLI RIHVTDRDAT DSSSDEEKAG  60
GEKSEQHGKT CVKEIIIANG KTEVIPKKKS KEKKDITVLQ GDVKKYRGVR QRKWGKWAAE  120
IRDARRKTRL WLGTFDTAEE AALAYDKAAI EIRAMASQEE HQKNEAVEKP SEIDVVEKPS  180
KIDLVEKFVN QVGESSVVLP RVVRIHLPDS SSDDEEKVEG EKSERHERTC VKEIIIENGK  240
TTVISKKMSR EKKDIKLLQE NAKKRIHVPE SDATDSSSDN EEKVEGEKSK RHERMCLNET  300
IIENGKTQVI SKKKSNEKKD VKLLQENAKK RICVPDCDAT DSSSGDEENV EGEKSKRHEL  360
TGAKEIVIEN GKTQVISKKK SKEKKHKKLL QENVKKRIHV LDHDTTDSSS DDEVKAERKK  420
SQQQEKSCAK EITFENGKTE VISKKKSKEK KDIMLLQGNV NKYRGVRQRK WGKWAAEIRD  480
TRKRTRTWLG TYDTAYEAAL AYDKAAIEIR GANALTNIIK PPPRKEINII FKIPSLPTDD  540
ARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-17104517158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783400.10.0PREDICTED: uncharacterized protein LOC104232005 isoform X2
RefseqXP_016494297.10.0PREDICTED: uncharacterized protein LOC107813530 isoform X2
TrEMBLA0A1S4BZG40.0A0A1S4BZG4_TOBAC; uncharacterized protein LOC107813530 isoform X2
TrEMBLA0A1U7XAC10.0A0A1U7XAC1_NICSY; uncharacterized protein LOC104232005 isoform X2
STRINGXP_009783399.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-18cytokinin response factor 4