PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016494410.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 413aa MW: 46004 Da PI: 4.8152

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016494410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	37.7	4.1e-12	250	290	4	44
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 +isl dl+++F ++ +dAA +Lgv++++ Kr CR +G++ W XP_016494410.1 250 RISLGDLQQQFGKKRNDAAESLGVSPSTFKRCCRANGLAKW 290 699************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	9.887	233	321	IPR003035	RWP-RK domain
Pfam	PF02042	5.2E-12	251	290	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.52E-15	310	399	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-13	317	399	No hit	No description
SMART	SM00666	8.1E-12	320	402	IPR000270	PB1 domain
Pfam	PF00564	1.0E-12	320	400	IPR000270	PB1 domain
PROSITE profile	PS51745	14.35	320	397	IPR000270	PB1 domain
CDD	cd05992	2.51E-15	323	399	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MGTVLVNLSI FTMLTVVYVA AAKITAEESD FSPSPAPVPA VGMDAGAGFQ LTQSGAFLLF 60 CLILCYLYLT DSLFANPDPD SFAAFADDSD QNLFADIINT SLQEDCFPSE MGLNNQILFG 120 IDVPLTSSVL LHSENRGEIT TDEPLQDKQM QSVHVNEITV LHQNYSQPRD KSKEKDYCRI 180 SLGDLQQQFG KKRNDAAESL GENRGEITTE PPDEPLQDKQ MQIVHVNETT VLHQNYSRPR 240 GKSKEKDYCR ISLGDLQQQF GKKRNDAAES LGVSPSTFKR CCRANGLAKW SCKLKVQPHT 300 TPTLTQRVVE SMATFQSDNT MSLKVSYNGV NVRFPLILSS GKNDLEAEVE TRFGIQIGSF 360 SIMYEDEDKD WILITCDLDL HHGMHILKNK GITTMKINLV NQIECDRIPN SNA

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MGTVLVNLSI FTMLTVVYVA AAKITAEESD FSPSPAPVPA VGMDAGAGFQ LTQSGAFLLF  60
CLILCYLYLT DSLFANPDPD SFAAFADDSD QNLFADIINT SLQEDCFPSE MGLNNQILFG  120
IDVPLTSSVL LHSENRGEIT TDEPLQDKQM QSVHVNEITV LHQNYSQPRD KSKEKDYCRI  180
SLGDLQQQFG KKRNDAAESL GENRGEITTE PPDEPLQDKQ MQIVHVNETT VLHQNYSRPR  240
GKSKEKDYCR ISLGDLQQQF GKKRNDAAES LGVSPSTFKR CCRANGLAKW SCKLKVQPHT  300
TPTLTQRVVE SMATFQSDNT MSLKVSYNGV NVRFPLILSS GKNDLEAEVE TRFGIQIGSF  360
SIMYEDEDKD WILITCDLDL HHGMHILKNK GITTMKINLV NQIECDRIPN SNA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016494410.1	0.0	PREDICTED: protein NLP5-like isoform X1
TrEMBL	A0A1S4BZT1	0.0	A0A1S4BZT1_TOBAC; protein NLP5-like isoform X1
STRING	XP_009589282.1	1e-141	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18197	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	2e-10	Nin-like family protein