PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016494844.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 185aa MW: 20851.1 Da PI: 6.16

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016494844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.4	2e-17	65	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+++YA++vGF++ + + ++ k +g i++ ++ Cs+e r+++ ++ C+a+l++++++++ w+vtk++++HnH+++ XP_016494844.1 65 NFFDAYARRVGFTIHVGQYSRDKPDGPIISWDYSCSREVVRRKNIES--------------CNAMLRIERKNSDSWVVTKFVEDHNHSIV 140 69*************************************998877..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-14	65	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MNIEVIDVEG QKRQKTGEIA AELIHNSKQG LPENFTERDA IVEVDDGEEK PYVGMEFQTE 60 EAAKNFFDAY ARRVGFTIHV GQYSRDKPDG PIISWDYSCS REVVRRKNIE SCNAMLRIER 120 KNSDSWVVTK FVEDHNHSIV NPSKVHYLQP RKHFSGASKT VGETPGAPTV IMVPVDGNHV 180 SVSSX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-164	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761563.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009761564.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009761565.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009761566.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009761567.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009761568.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009761570.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009761571.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_016494844.1	1e-136	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like, partial
TrEMBL	A0A1S4C1C4	1e-135	A0A1S4C1C4_TOBAC; protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A1U7VI92	1e-127	A0A1U7VI92_NICSY; protein FAR1-RELATED SEQUENCE 3-like
STRING	XP_009761563.1	1e-128	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-24	FAR1 family protein