PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495393.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 337aa    MW: 37388.6 Da    PI: 5.6208
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK42.51.3e-13178218444
          RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 
                     +i+l+dl+++F ++  dAA +Lgv++++ Kr CR +GI+ W
  XP_016495393.1 178 RITLSDLQQQFGKKRSDAAESLGVSPSTFKRCCRANGIAKW 218
                     69*************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151910.671161249IPR003035RWP-RK domain
PfamPF020426.4E-14179218IPR003035RWP-RK domain
SuperFamilySSF542772.26E-15234323No hitNo description
Gene3DG3DSA:3.10.20.2401.8E-13241323No hitNo description
PfamPF005648.5E-14244324IPR000270PB1 domain
PROSITE profilePS5174514.76244321IPR000270PB1 domain
SMARTSM006661.2E-12244326IPR000270PB1 domain
CDDcd059923.19E-16247323No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGTVLVILSI FTMLTVAYVA AAKITAEESD FSPSPAPAVG MDAGAGFQLT QSRAILLSCL  60
VLCYHYLTDS LFANPDPDSF AAFDADSDQN LFADIINTSL QEDCFPSEMG LNNQILVGID  120
VPLTSSVLLH SEKRGEITTE PPLQDKQMQS VHVNETTVLH RNYSRQRASK SKEKDYCRIT  180
LSDLQQQFGK KRSDAAESLG VSPSTFKRCC RANGIAKWSC KLKVQPHTTQ RVVESMATFQ  240
SDNTMSIKVS YNGVKVRFPL ILSSGKNDLE AEVETRFGIQ IVSFSIMYED EDKDWILITC  300
DLDLHHGMHT LKNKGITTMK INLVNQIECG RILNSNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770811.10.0PREDICTED: protein NLP3-like
RefseqXP_016495393.10.0PREDICTED: protein NLP3-like isoform X1
TrEMBLA0A1S4C2V70.0A0A1S4C2V7_TOBAC; protein NLP3-like isoform X1
TrEMBLA0A1U7W0T60.0A0A1U7W0T6_NICSY; protein NLP3-like
STRINGXP_009770811.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1819734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.17e-11Nin-like family protein