PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495622.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 645aa    MW: 71291.8 Da    PI: 6.4661
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23116216198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +a+++         ++ +  tl  +d +g++W++++iyr++++r++lt+GW  Fv++++L +gD++vF+  + +
  XP_016495622.1 116 FAKILTQSDANNGGGFSVPRYCADTIfprldysADPPVQ--TLLAKDVHGKTWKFRHIYRGTPRRHLLTTGWTTFVNSKKLVAGDSIVFM--RAE 206
                     89*********************999****996555545..8999*********************************************..347 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++  +v+++r
  XP_016495622.1 207 NGDVCVGIRR 216
                     8888***998 PP
2Auxin_resp105.37.3e-35261343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++Fev+++Prast+eF vk+++v++al+++++ GmRfkma+eteds    ++Gt+ +v+ +dp+rWp+S+Wr+L+
  XP_016495622.1 261 AANLAASGQPFEVTFYPRASTPEFFVKASSVKAALQIRWCSGMRFKMAVETEDSTMSWFMGTICSVQVADPIRWPDSPWRLLQ 343
                     7899****************************************************999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.55E-29107217IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-36109218IPR015300DNA-binding pseudobarrel domain
CDDcd100172.56E-19115216No hitNo description
SMARTSM010191.1E-20116218IPR003340B3 DNA binding domain
PfamPF023621.4E-21116216IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169116218IPR003340B3 DNA binding domain
PfamPF065075.7E-30261343IPR010525Auxin response factor
PROSITE profilePS5174511.158559639IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MITSKEEEEK WLDSKFWHAC AGSIVQMPAV NSIVFYFPQG HAEHACGNVE FRSEIRIPSY  60
IPCRVSGIKY MADQENDEVF AKIRLTPVSS NEVEIVDDGV VAKSGLDNDQ ENPTSFAKIL  120
TQSDANNGGG FSVPRYCADT IFPRLDYSAD PPVQTLLAKD VHGKTWKFRH IYRGTPRRHL  180
LTTGWTTFVN SKKLVAGDSI VFMRAENGDV CVGIRRVKKG IAGGHETSFA VPYRGFSTFL  240
RDDENKLMKR GKVKAESVIE AANLAASGQP FEVTFYPRAS TPEFFVKASS VKAALQIRWC  300
SGMRFKMAVE TEDSTMSWFM GTICSVQVAD PIRWPDSPWR LLQVTWDEPD LLQHVKCVNP  360
WLVELVSNMP TVHFSPVSPQ QKKPRLLQRS DFPLNCHLPM PGFPDNHFLP NDTPAGMQGA  420
RHTQYGFSLS DLHFNKLHSS PFPVGFPPLD HAAATPSPSN STLIPKPSSS NDMSCLLTLG  480
SSTETATKSD CDKAPQLVLF GQPIFTEQQI SLSSSGDTVS PVCARASSSD GNADKIGNIS  540
DESAFTFDHH GLSEQNVEIG HCKVFIESED VGLTLELSEL GSYEALHKKL SNIFGIKIPE  600
MLNRVLYRDI TGAVKQLGDE PFSDFVKTAR RLTILTDASS VGARE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-811236451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495620.10.0PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_016495621.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S4C3B70.0A0A1S4C3B7_TOBAC; Auxin response factor
STRINGXP_009605930.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]