PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495733.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 480aa    MW: 53343.5 Da    PI: 6.9037
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-16158207155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+++ ++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_016495733.1 158 SQYRGVTFYGRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16158216IPR016177DNA-binding domain
PfamPF008471.3E-8158207IPR001471AP2/ERF domain
CDDcd000181.02E-10159217No hitNo description
PROSITE profilePS5103217.016159215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-16159216IPR001471AP2/ERF domain
SMARTSM003801.7E-31159221IPR001471AP2/ERF domain
CDDcd000184.57E-13250295No hitNo description
SuperFamilySSF541712.09E-6250294IPR016177DNA-binding domain
SMARTSM003805.7E-13251299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MMLDLNLSAI YDEKVLEGSV VDESGTSNSS ARNAEASSSA GDDDTCSTRA GDMFAFNFDF  60
LKVGGAETSR SCSNNDDDQD GYDENRRVTQ SEFVTRQLFP LDRSHTSRKP DWVDPSFDPP  120
NTVSFREAEI VRAQQQYQQH QQQQQVKKSR RGPRSRSSQY RGVTFYGRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNLSDYE EDMKQMKSLG KEEFVHVLRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKAYDKAA IKCNGREAVT NFEPSTYEGE  300
THSDPQSAGS QQDLDLNLGI ATSSPKENER MGSFQYHPYD MQDATKSQMD KSCPAIVGSS  360
HFKAQPVTSE QAHVWNGVYS NFFPSYEERA SGKRIDIGSS QGRPNWALQM HGQVGTTPMS  420
MFTAAASSGF STPATTASAS PMSGPNPNTS TPNLPFASYS TPSTNTTQYY YQIRPPLPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495733.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-108RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S4C3V30.0A0A1S4C3V3_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009623868.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-104related to AP2.7