PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495796.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 335aa    MW: 37972.8 Da    PI: 7.3712
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51.1e-1554113155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  XP_016495796.1  54 SIYRGVTRHRWTGRYEAHLWDkNCWNEtqsKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 113
                     57*******************999977877557*************************98 PP
2AP249.98e-16156207155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ + +g
  XP_016495796.1 156 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEHRG 207
                     79****99**********99966...3.6***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.77E-1154123No hitNo description
PfamPF008476.9E-1254113IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1754123IPR016177DNA-binding domain
SMARTSM003802.4E-2755127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1655122IPR001471AP2/ERF domain
PROSITE profilePS5103220.3155121IPR001471AP2/ERF domain
PRINTSPR003675.3E-65667IPR001471AP2/ERF domain
CDDcd000181.79E-23156217No hitNo description
PfamPF008471.3E-11156207IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17156217IPR016177DNA-binding domain
SMARTSM003803.1E-26157221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18157216IPR001471AP2/ERF domain
PROSITE profilePS5103217.952157215IPR001471AP2/ERF domain
PRINTSPR003675.3E-6197217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAKTSKAYQK NTSYTNSSEK NNSNSGSSSD HAISKGKRKR KAVVSRDSPP QRSSIYRGVT  60
RHRWTGRYEA HLWDKNCWNE TQSKKGRQVY LGAYDDEEAA AHAYDLAALK YWGQDTILNF  120
PVSTYEKELM EMEGQSREEY IGSLRRKSSG FSRGVSRYRG VARHHHNGRW EARIGRVFGN  180
KYLYLGTYAT QEEAAMAYDM AAIEHRGPNA VTNFDLSRYI KCNPQPKPNP NSTDLNTIPN  240
TKEEIDISFT HQQHEQQQSS NSVGTSAPPP HAVGGTAASS AVDCPETPPE PDRPRRCFPD  300
DIQTYFDCQD SSIFVEEHDI IFGDLDSFVL PMFEY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621695.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_016495796.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-119AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S4C3P50.0A0A1S4C3P5_TOBAC; AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
STRINGXP_009621695.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-107ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]