PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495797.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 333aa    MW: 37679.5 Da    PI: 7.1001
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.4e-1354111155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+  +++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  XP_016495797.1  54 SIYRGVT--RWTGRYEAHLWDkNCWNEtqsKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 111
                     579***7..48**********999977877557*************************98 PP
2AP249.97.9e-16154205155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ + +g
  XP_016495797.1 154 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEHRG 205
                     79****99**********99966...3.6***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-1454121IPR016177DNA-binding domain
PfamPF008478.0E-855111IPR001471AP2/ERF domain
PROSITE profilePS5103217.51755119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-1555120IPR001471AP2/ERF domain
SMARTSM003801.6E-2255125IPR001471AP2/ERF domain
CDDcd000181.44E-23154215No hitNo description
PfamPF008471.3E-11154205IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17154215IPR016177DNA-binding domain
PROSITE profilePS5103217.952155213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18155214IPR001471AP2/ERF domain
SMARTSM003803.1E-26155219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAKTSKAYQK NTSYTNSSEK NNSNSGSSSD HAISKGKRKR KAVVSRDSPP QRSSIYRGVT  60
RWTGRYEAHL WDKNCWNETQ SKKGRQVYLG AYDDEEAAAH AYDLAALKYW GQDTILNFPV  120
STYEKELMEM EGQSREEYIG SLRRKSSGFS RGVSRYRGVA RHHHNGRWEA RIGRVFGNKY  180
LYLGTYATQE EAAMAYDMAA IEHRGPNAVT NFDLSRYIKC NPQPKPNPNS TDLNTIPNTK  240
EEIDISFTHQ QHEQQQSSNS VGTSAPPPHA VGGTAASSAV DCPETPPEPD RPRRCFPDDI  300
QTYFDCQDSS IFVEEHDIIF GDLDSFVLPM FEY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495797.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-115AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S4C3Q80.0A0A1S4C3Q8_TOBAC; AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
STRINGXP_009621695.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-103ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]