PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016495804.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 182aa MW: 21275.5 Da PI: 8.8351

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016495804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.2	7.2e-14	83	162	14	80
T-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 14 grlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 +rl +p +f +e + +k++s++++++d++g+ ++k++ +++ +r+vl kGW++ v+an+L+ gD+v XP_016495804.1 83 SRLLIPGTFDKELlknlseeerikleNDDKNKSFEVKVMDQDGNFHKMKFTRWQSLKRFVLNKGWNNLVEANNLQKGDTV 162 6788888888777888888888888877788**********999999999************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.292	70	182	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0065	73	177	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	9.4E-16	74	176	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.67E-17	76	175	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.6E-11	83	162	IPR003340	B3 DNA binding domain
CDD	cd10017	8.27E-15	91	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MTRIKLFGKE IEVEEKPKTI KLFGTRIYPC NVKHEQEQEQ EAALQENLPP TNMCQAIRLA 60 GGSRLVYIGR KKAEDSDINP DLSRLLIPGT FDKELLKNLS EEERIKLEND DKNKSFEVKV 120 MDQDGNFHKM KFTRWQSLKR FVLNKGWNNL VEANNLQKGD TVDLWHFRID LKLCFAINII 180 KN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774698.1	1e-132	PREDICTED: putative B3 domain-containing protein At3g49610
Refseq	XP_016495804.1	1e-132	PREDICTED: putative B3 domain-containing protein At3g49610
TrEMBL	A0A1S4C414	1e-131	A0A1S4C414_TOBAC; putative B3 domain-containing protein At3g49610
TrEMBL	A0A1U7W7U3	1e-131	A0A1U7W7U3_NICSY; putative B3 domain-containing protein At3g49610
STRING	XP_009774698.1	1e-132	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11679	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05930.1	6e-10	B3 family protein