PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496038.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 300aa    MW: 33026.4 Da    PI: 10.1057
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA88.59.4e-28132186258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p++VNaKQy++Il+RR++Rak  e kk   k rkpylh SRh hA+rRpRg+gGrF
  XP_016496038.1 132 GPIFVNAKQYHGILRRRKSRAKEME-KKA-LKPRKPYLHLSRHLHAMRRPRGCGGRF 186
                     69*******************9666.555.6*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-30129189IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.964130189IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.4E-21133155IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-23133186IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.4E-21163186IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTIMHTLFSS KGNEGIVQNP VATLSTTVPW WSSGLVSQSS SAEHSELPKG NATEFTIFSG  60
DWKSSGYGQN QSNIQAVANM DYRGQFELGF GQSLISAKYP YGGEQSVGLF SAYGPQLSGR  120
VMLPLNLASD EGPIFVNAKQ YHGILRRRKS RAKEMEKKAL KPRKPYLHLS RHLHAMRRPR  180
GCGGRFLNTR KMNGTMKGGK TTDTVKTGDV YSFYPIGSQN SEVLQSDSSN LSSPKETTGS  240
RLCHSSEVTN MYSRRNLDPF PFQDLRPSVQ PIPDMMNTGH GILMAGKWVS AADSCCNLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-16131187260HAPB protein
4g92_A3e-16131187260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897581e-174AM489758.1 Petunia x hybrida partial mRNA for YA1 (nf-YA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496038.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X4
TrEMBLA0A1S4C4Q60.0A0A1S4C4Q6_TOBAC; nuclear transcription factor Y subunit A-10-like isoform X4
STRINGXP_009608878.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.19e-41nuclear factor Y, subunit A2