PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496135.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 312aa    MW: 35428.9 Da    PI: 6.8975
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.61.3e-3521146289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec..eaesssss 81 
                     +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++             s ss ++   e+++++++
  XP_016496135.1  21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpstidgadgS-SSGNNIvlEQQQQQQE 114
                     79**************************************************************98888877766642.2222222322222222 PP

             TCP  82 as.nsssg..........................k 89 
                      + +   +                           
  XP_016496135.1 115 FQlQ---RqleennpsggnscnsymmqthstggeT 146
                     2221...0222333444433443333333333331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3121127IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7852381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKRATGGEIV QVEGGHILRS TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL IKKAKNAIDK LDELPPWNPS TIDGADGSSS GNNIVLEQQQ QQQEFQLQRQ  120
LEENNPSGGN SCNSYMMQTH STGGETQSLG DTMKSFFPMN SETSLMNFQN YPHEIMPRSA  180
SFQNEDLGLS LHSTTFHDQN SNHRASSSHD HQTIFSSQNF ETNYSRMAGW ILPHHQQTLY  240
SPQPQGAVFP QREPLQSNFS QLIHAWEERP PMNHVHHQAE ISNRHFTSDF QIPARIHGEH  300
EEPSSASPNS HH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-232881154Putative transcription factor PCF6
5zkt_B5e-232881154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496135.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A1S4C4S30.0A0A1S4C4S3_TOBAC; transcription factor TCP4-like
STRINGXP_009629629.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-55TCP family protein