PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496196.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 168aa    MW: 19115.1 Da    PI: 9.7975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000964769123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  XP_016496196.1 47 FECKTCNRQFSSFQALGGHRASH 69
                    89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.1E-845115No hitNo description
PfamPF139121.1E-124671IPR007087Zinc finger, C2H2
SMARTSM003550.24769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2424774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139127.9E-1192117IPR007087Zinc finger, C2H2
PROSITE profilePS501578.66393115IPR007087Zinc finger, C2H2
SMARTSM003550.2793115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKMVVLPIKR EREGEFDTIT TMANYLMLLS RQANNFDNIN NSPNRVFECK TCNRQFSSFQ  60
ALGGHRASHK KPRLMGELNF HQLSTSPPKP KTHECSICGL EFPIGQALGG HMRRHRAILN  120
ENNNIQVPHV VKKSNSRRVL CLDLNLTPLE NDLEFKLGKS SPVVDCFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496196.11e-122PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A1S4C4V01e-121A0A1S4C4V0_TOBAC; zinc finger protein ZAT11-like
STRINGXP_009593204.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-40C2H2 family protein