PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496356.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 190aa    MW: 22122.2 Da    PI: 9.6421
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.11.4e-26161361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkev 92 
                     lp+G+rF+Ptdeel   yL            ++i+e+diyk++P++L   ++k++e ++yfF++  +ky++gk+ +r    ++g+Wka+    + 
  XP_016496356.1  16 LPQGVRFKPTDEELN-SYL------------RIINELDIYKYDPKELSgFAIKHSEGRMYFFTPLTNKYENGKKIQRkiYSDEGFWKASQARSDH 97 
                     799**********98.676............4699************966888888899***************999433669************ PP

             NAM  93 lskkgelvglkktLvfy..kg.rapkgektdWvmheyrl 128
                      +k+g+ +g+k+ Lv+y  kg +++kg+kt+W+m+e+rl
  XP_016496356.1  98 REKNGAIIGTKTNLVYYeyKGqKKSKGTKTSWLMQEFRL 136
                     **9**************664448999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.876161IPR003441NAC domain
SuperFamilySSF1019413.01E-3114159IPR003441NAC domain
PfamPF023655.8E-1617136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAMATTDNGY EWKKKLPQGV RFKPTDEELN SYLRIINELD IYKYDPKELS GFAIKHSEGR  60
MYFFTPLTNK YENGKKIQRK IYSDEGFWKA SQARSDHREK NGAIIGTKTN LVYYEYKGQK  120
KSKGTKTSWL MQEFRLPENH HPRPLFNGTM NELIICVIYD NGRVKDDDQV VILTQCNPQN  180
AIGIKVSVNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-191615917163NO APICAL MERISTEM PROTEIN
1ut4_B4e-191615917163NO APICAL MERISTEM PROTEIN
1ut7_A4e-191615917163NO APICAL MERISTEM PROTEIN
1ut7_B4e-191615917163NO APICAL MERISTEM PROTEIN
3swm_A4e-191615920166NAC domain-containing protein 19
3swm_B4e-191615920166NAC domain-containing protein 19
3swm_C4e-191615920166NAC domain-containing protein 19
3swm_D4e-191615920166NAC domain-containing protein 19
3swp_A4e-191615920166NAC domain-containing protein 19
3swp_B4e-191615920166NAC domain-containing protein 19
3swp_C4e-191615920166NAC domain-containing protein 19
3swp_D4e-191615920166NAC domain-containing protein 19
4dul_A4e-191615917163NAC domain-containing protein 19
4dul_B4e-191615917163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496356.11e-142PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A1S4C5801e-141A0A1S4C580_TOBAC; NAC domain-containing protein 72-like
STRINGXP_009793522.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1556777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.22e-18TCV-interacting protein