PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496488.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 364aa    MW: 41189.6 Da    PI: 5.797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.85.9e-30142202259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+++eitY+g+H+++
  XP_016496488.1 142 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPTLFEITYKGSHTCN 202
                     8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-29135203IPR003657WRKY domain
SuperFamilySSF1182902.35E-26140203IPR003657WRKY domain
SMARTSM007741.7E-40141203IPR003657WRKY domain
PROSITE profilePS5081121.494142204IPR003657WRKY domain
PfamPF031065.0E-27142201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDCGFNWEYN SLINELTQGM GHAKQLRAYF SSAASSCSSN KIQELHLHMQ MILSSFENSL  60
SILKWTGSIT QTPQLVVAPP ISNVALESSF SVDESPKTVD LNGNFKENDQ DLRYVSKKRK  120
QLPTWTEQVR VSAENGFEGP TDDGYSWRKY GQKDILGAKY PRSYYRCTYR LMQNCWATKQ  180
VQRSDDDPTL FEITYKGSHT CNQAFNSAHT TSSEKHEFKK QANNPKIVQS NQMLANLQAN  240
LRVNTNDLDK KETTCSFPFS PTFSGFVDEN LHFQVSQVDD NLVGGYSPSF ISPTTPESSY  300
FSLRSCQMNG SQRIHSLHNS ESDLPDLFSA NTSSTSSPIV GLEFPLEHVE LDPNFPFDNS  360
EFFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19142201968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119LRYVSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496488.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1S4C5W40.0A0A1S4C5W4_TOBAC; probable WRKY transcription factor 53
STRINGXP_009613243.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-61WRKY family protein