PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016496563.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 409aa MW: 46369.4 Da PI: 8.3579

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016496563.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.4e-14	217	263	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_016496563.1 217 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 263 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.49E-4	217	266	No hit	No description
Pfam	PF00010	1.8E-11	217	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.9E-15	218	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-15	218	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	220	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	3.7E-4	302	356	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
KGSLPLLFNT THKQKLFFSE RNYTKLEQVE RQKKRPFLSI KKTKTLSLFI SIQQSKAKQR 60 KDQEDQQGNC SEAIHNLQQC IQEQLLLRHQ QSNQENMQPQ SFNINPVHFP SNSEMSQILP 120 WTLPPVQPFN PVHHHHVDPF LLPPTPSPYG GLFNRRVPQF AYEGTTSSDH HLRFISDTLG 180 HVVHHQPAGS APFGLQAELQ KMTAQEIMDA KALAASKSHS EAERRRRERI NNHLAKLRSL 240 LPNTTKTDKA SLLAEVIQHV KELKRQTSLI AETSPVPTEI DELTVDNASD EFEDGKFVIK 300 ASLCCEDRSD LLPDLIKTLK TLRLKTLKAE ITTLGGRVRN VLFITGDHNY NQEDDLSTSD 360 DLDLQQQQPQ YSISSIQEAL KAVMEKSSGD DSASGNVKRQ RTNNINILS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

KGSLPLLFNT THKQKLFFSE RNYTKLEQVE RQKKRPFLSI KKTKTLSLFI SIQQSKAKQR  60
KDQEDQQGNC SEAIHNLQQC IQEQLLLRHQ QSNQENMQPQ SFNINPVHFP SNSEMSQILP  120
WTLPPVQPFN PVHHHHVDPF LLPPTPSPYG GLFNRRVPQF AYEGTTSSDH HLRFISDTLG  180
HVVHHQPAGS APFGLQAELQ KMTAQEIMDA KALAASKSHS EAERRRRERI NNHLAKLRSL  240
LPNTTKTDKA SLLAEVIQHV KELKRQTSLI AETSPVPTEI DELTVDNASD EFEDGKFVIK  300
ASLCCEDRSD LLPDLIKTLK TLRLKTLKAE ITTLGGRVRN VLFITGDHNY NQEDDLSTSD  360
DLDLQQQQPQ YSISSIQEAL KAVMEKSSGD DSASGNVKRQ RTNNINILS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	3e-74	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016496563.1	0.0	PREDICTED: transcription factor bHLH30-like, partial
Swissprot	Q9S7Y1	1e-100	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1S4C632	0.0	A0A1S4C632_TOBAC; transcription factor bHLH30-like
STRING	XP_009614307.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-81	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]