PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496658.1
Common NameNtMYBJS1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 230aa    MW: 26145.9 Da    PI: 5.4335
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd+ll+++++++G ++W++ ++  g+ R++k+c++rw +yl
   XP_016496658.1 14 RGPWSKEEDDLLINYINKHGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding47.73.6e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+  ++++++ lG++ W+ Ia++++ gRt++++k+ w++
   XP_016496658.1  67 RGNFTPEEENTIIKLHQVLGNR-WSGIAARLP-GRTDNEIKNIWHT 110
                      89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.898961IPR017930Myb domain
SuperFamilySSF466892.14E-3011108IPR009057Homeodomain-like
SMARTSM007174.8E-151363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
CDDcd001671.54E-111661No hitNo description
PROSITE profilePS5129424.7462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-2665115IPR009057Homeodomain-like
SMARTSM007173.3E-1366114IPR001005SANT/Myb domain
PfamPF002496.1E-1467110IPR001005SANT/Myb domain
CDDcd001672.87E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRAPCCEKL GLKRGPWSKE EDDLLINYIN KHGHPNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TPEEENTIIK LHQVLGNRWS GIAARLPGRT DNEIKNIWHT RLKKRVDDKS  120
QPQETQDIKD QQTMETSKSE ENFETRSSEP ENSKDNSEEI SSPKTNSQIQ EHPNTPSSTL  180
SSGDSCSNTT ATSASSLADE SRDQILLDNL LEVDDNFWSE VLWAPAETND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2369510.0AB236951.1 Nicotiana tabacum NtMYBJS1 mRNA for methyl jasmonate induced MYB-related transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770485.11e-169PREDICTED: myb-related protein Myb4-like
RefseqXP_016496658.11e-170PREDICTED: myb-related protein Myb4-like, partial
SwissprotQ9LNC92e-74MYB13_ARATH; Transcription factor MYB13
TrEMBLA0A1S4C6A81e-168A0A1S4C6A8_TOBAC; myb-related protein Myb4-like
TrEMBLA0A1U7W8B21e-168A0A1U7W8B2_NICSY; myb-related protein Myb4-like
STRINGXP_009770485.11e-169(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.16e-75myb domain protein 13
Publications ? help Back to Top
  1. G
    A novel R2R3 MYB transcription factor NtMYBJS1 is a methyl jasmonate-dependent regulator of phenylpropanoid-conjugate biosynthesis in tobacco.
    Plant J., 2006. 46(4): p. 573-92
    [PMID:16640595]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]