PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496933.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 180aa    MW: 20412.6 Da    PI: 10.441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.82.9e-061765653
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIks 53
                    + +Er+RR +++   +eL   +P+  +  psk  l   + L +A+ YIk+
  XP_016496933.1 17 KTVERNRRIHMKYLCSELIFRIPPqHF-KPSKHmLPQQDQLDQATTYIKK 65
                    679*********************666.555556**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-61679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-71781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
METTSPSKVS SEKPDRKTVE RNRRIHMKYL CSELIFRIPP QHFKPSKHML PQQDQLDQAT  60
TYIKKVREKV ETLKRKIQIA RGTRESNSPK TSMSTSIKSP VIEVKELGPS LEVILISGLT  120
KNFTLYEVIS IAEEEGAEVV SANFSTFGNN VFHTIHAQVK VTRLGMDASR IYGRLQKLVG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496933.11e-130PREDICTED: uncharacterized protein LOC107815812
TrEMBLA0A1S4C7171e-129A0A1S4C717_TOBAC; uncharacterized protein LOC107815812
STRINGXP_009618665.13e-74(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60831423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-24bHLH family protein