PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497202.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 244aa    MW: 27846.5 Da    PI: 10.6267
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497202.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.61e-1028922086
        trihelix 20 rlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    rl+rg+l++++W+ev++ +  r+ g+  +r+ +qCk++++ l+k+yk +k+ ++       s++p+++ l+
  XP_016497202.1 28 RLNRGNLRQKDWKEVADTVnsRQNGVkpQRTDVQCKNRIDTLKKKYKLEKTKSSP------SKWPFYNCLD 92
                    7899***************88777776689*****************99998885......58***99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-162492No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRAKPVAPFT ARKKIKKENA AAADXYIRLN RGNLRQKDWK EVADTVNSRQ NGVKPQRTDV  60
QCKNRIDTLK KKYKLEKTKS SPSKWPFYNC LDYLIGTNNV STSPCNRKLT AAITLTVKSS  120
SNPNPNFGAV NYSGSSSRMN SSGSNYSSHD DLPFGSGGRK NKMEYVGLAE ETTAYKELAR  180
AILRFGEIYE RIESTKQQQM VELEKQRMKF TKDLEVQRMN MFMETQLQIE RAKRPARHPT  240
LTGK
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497202.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG82e-19ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1S4C7H10.0A0A1S4C7H1_TOBAC; trihelix transcription factor ASIL2-like
STRINGXP_009786679.11e-163(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137071215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.15e-49sequence-specific DNA binding transcription factors