PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497238.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 230aa    MW: 25724.8 Da    PI: 6.2861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-174191155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr++  + +Wv+e+r+ps+   +kr++lg++ tae+Aa+a++ a+++l+g
  XP_016497238.1 41 PVYRGVRRRN-NDKWVCELREPSK---QKRIWLGSYPTAEMAARAHDVAALALRG 91
                    68*****887.8*********964...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-124191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2842101IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2042101IPR016177DNA-binding domain
PROSITE profilePS5103221.6674299IPR001471AP2/ERF domain
SMARTSM003802.5E-2742105IPR001471AP2/ERF domain
PRINTSPR003675.2E-74354IPR001471AP2/ERF domain
CDDcd000183.66E-2843101No hitNo description
PRINTSPR003675.2E-76581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNNSSSSIRV AVSDEEDINI LALRKPKKRA GRKKFKETRH PVYRGVRRRN NDKWVCELRE  60
PSKQKRIWLG SYPTAEMAAR AHDVAALALR GQLATLNFAD SAWRLQMPAS KDPKDLHKAA  120
AKAAEALWPG EEADVNSRGA ANTGNGNEEM KVVSQEENAA YNCTQNIVTA ENVLYSNSCS  180
EVGMLGTQEW QAYMEERSLF SPNPCCLGSC FSWDDDMESD VEVSLWSYSV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497238.11e-172PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9LN865e-53DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A1S4C7W61e-170A0A1S4C7W6_TOBAC; dehydration-responsive element-binding protein 1E-like
STRINGXP_009777001.11e-145(Nicotiana sylvestris)
STRINGXP_009588056.11e-146(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-31ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]