PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016497265.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 345aa MW: 38149 Da PI: 8.9445

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016497265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.8	4.6e-33	164	222	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+ed+++v++tYeg H+h+ XP_016497265.1 164 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSEDTSIVVTTYEGIHTHP 222 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-33	149	224	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-29	156	224	IPR003657	WRKY domain
PROSITE profile	PS50811	30.71	159	224	IPR003657	WRKY domain
SMART	SM00774	4.2E-39	164	223	IPR003657	WRKY domain
Pfam	PF03106	4.8E-26	165	222	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MLLIKSMADK ENKLKPDTSS LEISTFSDQI PASTYSLFDM PTCETEKGSS LSLMFSSHPI 60 TTPSIFDLLQ PPPPPPVPLL VPSQLKIVNK IPSSEIVNTP NSSSISSSST EAAANDDQLQ 120 ATTKTVDDDD EHKNKKQLKP KKKNQKRQRE PRFAFMTKSE VDHLDDGFRW RKYGQKAVKN 180 SPFPRSYYRC TTATCGVKKR VERSSEDTSI VVTTYEGIHT HPCPITPRSC IGILSETTAY 240 GGSIGGLGGN GGGSSLFIPQ FHYQALQQQP TYFQTPTLPM NFISTCDSSL YSSQERRFSP 300 STSSSSSLAR DHGLLQDMVP SQMRRDPKQD RVAFSLSTLS MKSQS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MLLIKSMADK ENKLKPDTSS LEISTFSDQI PASTYSLFDM PTCETEKGSS LSLMFSSHPI  60
TTPSIFDLLQ PPPPPPVPLL VPSQLKIVNK IPSSEIVNTP NSSSISSSST EAAANDDQLQ  120
ATTKTVDDDD EHKNKKQLKP KKKNQKRQRE PRFAFMTKSE VDHLDDGFRW RKYGQKAVKN  180
SPFPRSYYRC TTATCGVKKR VERSSEDTSI VVTTYEGIHT HPCPITPRSC IGILSETTAY  240
GGSIGGLGGN GGGSSLFIPQ FHYQALQQQP TYFQTPTLPM NFISTCDSSL YSSQERRFSP  300
STSSSSSLAR DHGLLQDMVP SQMRRDPKQD RVAFSLSTLS MKSQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-25	157	224	10	77	Probable WRKY transcription factor 4
2lex_A	1e-25	157	224	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016497265.1	0.0	PREDICTED: probable WRKY transcription factor 48 isoform X1
Swissprot	O22900	2e-53	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A1S4C803	0.0	A0A1S4C803_TOBAC; probable WRKY transcription factor 48 isoform X1
STRING	XP_009764098.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	4e-51	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]