PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016497269.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 237aa MW: 26511 Da PI: 9.1126

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016497269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	164	221	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+ed+++v++tYe e + XP_016497269.1 164 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSEDTSIVVTTYEAEYIC 221 59***************************************************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-31	149	222	IPR003657	WRKY domain
SuperFamily	SSF118290	1.02E-25	156	222	IPR003657	WRKY domain
PROSITE profile	PS50811	27.129	159	219	IPR003657	WRKY domain
SMART	SM00774	9.1E-35	164	223	IPR003657	WRKY domain
Pfam	PF03106	2.5E-23	165	221	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MLLIKSMADK ENKLKPDTSS LEISTFSDQI PASTYSLFDM PTCETEKGSS LSLMFSSHPI 60 TTPSIFDLLQ PPPPPPVPLL VPSQLKIVNK IPSSEIVNTP NSSSISSSST EAAANDDQLQ 120 ATTKTVDDDD EHKNKKQLKP KKKNQKRQRE PRFAFMTKSE VDHLDDGFRW RKYGQKAVKN 180 SPFPRSYYRC TTATCGVKKR VERSSEDTSI VVTTYEAEYI CSRVAFSLST LSMKSQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-24	157	219	10	72	Probable WRKY transcription factor 4
2lex_A	6e-24	157	219	10	72	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016497269.1	1e-174	PREDICTED: probable WRKY transcription factor 48 isoform X5
TrEMBL	A0A1S4C8I4	1e-173	A0A1S4C8I4_TOBAC; probable WRKY transcription factor 48 isoform X5
STRING	XP_009626377.1	1e-152	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	6e-40	WRKY DNA-binding protein 57